Recent Episodes
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#70 Prioritizing drug target genes with Marie Sadler
Dec 21, 2023 – 00:52:20 -
#69 Suffix arrays in optimal compressed space and δ-SA with Tomasz Kociumaka and Dominik Kempa
Sep 29, 2023 – 00:56:46 -
#68 Phylogenetic inference from raw reads and Read2Tree with David Dylus
Aug 28, 2023 – 00:49:11 -
#67 AlphaFold and variant effect prediction with Amelie Stein
Jul 29, 2023 – 00:35:25 -
#66 AlphaFold and shape-mers with Janani Durairaj
Jul 10, 2023 – 00:20:51 -
#65 AlphaFold and protein interactions with Pedro Beltrao
Jun 21, 2023 – 00:52:23 -
#64 Enformer: predicting gene expression from sequence with Žiga Avsec
Nov 9, 2021 – 00:59:41 -
#63 Bioinformatics Contest 2021 with Maksym Kovalchuk and James Matthew Holt
Sep 27, 2021 – 01:00:47 -
#62 Steady states of metabolic networks and Dingo with Apostolos Chalkis
Jul 28, 2021 – 38:25 -
#61 3D genome organization and GRiNCH with Da-Inn Erika Lee
Jun 23, 2021 – 1:09:41 -
#60 Differential gene expression and DESeq2 with Michael Love
May 12, 2021 – 01:31:15 -
#59 Proteomics calibration with Lindsay Pino
Apr 21, 2021 – 00:48:26 -
#58 B cell maturation and class switching with Hamish King
Mar 31, 2021 – 01:29:11 -
#57 Enhancers with Molly Gasperini
Mar 10, 2021 – 00:46:57 -
#56 Polygenic risk scores in admixed populations with Bárbara Bitarello
Feb 17, 2021 – 1:30:12 -
#55 Phylogenetics and the likelihood gradient with Xiang Ji
Jan 13, 2021 – 00:57:02 -
#54 Seeding methods for read alignment with Markus Schmidt
Dec 16, 2020 – 01:00:46 -
#53 Real-time quantitative proteomics with Devin Schweppe
Nov 18, 2020 – 01:03:13 -
#52 How 23andMe finds identical-by-descent segments with William Freyman
Oct 27, 2020 – 42:40 -
#51 Basset and Basenji with David Kelley
Oct 7, 2020 – 01:13:58 -
#50 ENCODE3 with Jill Moore
Sep 10, 2020 – 00:56:02 -
#49 Most Permissive Boolean Networks with Loïc Paulevé
Aug 19, 2020 – 01:04:01 -
#48 Machine learning for drug development with Marinka Zitnik
Jul 29, 2020 – 01:25:08 -
#47 Reproducible pipelines and NGLess with Luis Pedro Coelho
Jun 24, 2020 – 00:57:34 -
#46 HiFi reads and HiCanu with Sergey Nurk and Sergey Koren
May 27, 2020 – 01:09:08 -
#45 Genome assembly and Canu with Sergey Koren and Sergey Nurk
May 20, 2020 – 01:16:34 -
#44 DNA tagging and Porcupine with Kathryn Doroschak
Apr 29, 2020 – 00:45:00 -
#43 Generalized PCA for single-cell data with William Townes
Mar 27, 2020 – 59:44 -
#42 Spectrum-preserving string sets and simplitigs with Amatur Rahman and Karel Břinda
Feb 28, 2020 – 00:53:20 -
#41 Epidemic models with Kris Parag
Jan 27, 2020 – 01:08:08 -
#40 Plasmid classification and binning with Sergio Arredondo-Alonso and Anita Schürch
Dec 30, 2019 – 45:04 -
#39 Amplicon sequence variants and bias with Benjamin Callahan
Nov 29, 2019 – 01:01:57 -
#38 Issues in legacy genomes with Luke Anderson-Trocmé
Oct 22, 2019 – 01:01:13 -
#37 Causality and potential outcomes with Irineo Cabreros
Sep 27, 2019 – 40:46 -
#36 scVI with Romain Lopez and Gabriel Misrachi
Aug 30, 2019 – 1:20:08 -
#35 The role of the DNA shape in transcription factor binding with Hassan Samee
Jul 26, 2019 – 1:01:45 -
#34 Power laws and T-cell receptors with Kristina Grigaityte
Jun 29, 2019 – 1:26:36 -
#33 Genome assembly from long reads and Flye with Mikhail Kolmogorov
May 31, 2019 – 01:12:56 -
#32 Deep tensor factorization and a pitfall for machine learning methods with Jacob Schreiber
Apr 29, 2019 – 1:15:14 -
#31 Bioinformatics Contest 2019 with Alexey Sergushichev and Gennady Korotkevich
Mar 24, 2019 – 01:46:23 -
#30 Bayesian inference of chromatin structure from Hi-C data with Simeon Carstens
Feb 27, 2019 – 1:05:42 -
#29 Haplotype-aware genotyping from long reads with Trevor Pesout
Jan 27, 2019 – 01:12:08 -
#28 Space-efficient variable-order Markov models with Fabio Cunial
Dec 28, 2018 – 01:09:17 -
#27 Classification of CRISPR-induced mutations and CRISPRpic with HoJoon Lee and Seung Woo Cho
Nov 29, 2018 – 00:56:36 -
#26 Feature selection, Relief and STIR with Trang Lê
Oct 27, 2018 – 1:08:43 -
#25 Transposons and repeats with Kaushik Panda and Keith Slotkin
Sep 24, 2018 – 01:40:56 -
#24 Read correction and Bcool with Antoine Limasset
Aug 31, 2018 – 59:44 -
#23 RNA design, EteRNA and NEMO with Fernando Portela
Jul 27, 2018 – 1:31:10 -
#22 smCounter2: somatic variant calling and UMIs with Chang Xu
Jun 29, 2018 – 1:04:15 -
#21 Linear mixed models, GWAS, and lme4qtl with Andrey Ziyatdinov
May 31, 2018 – 0:50:50
Recent Reviews
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Adam KlieGreat breadth and exposition of cool topics!I get a lot out of these podcasts! I’m a 3rd year PhD student studying bioinformatics and I feel that the breadth of these topics are giving me a much better feel of all that’s out there. They also have simplified a lot of complex concepts for me. Thanks so much for putting this on! Dreaming of the day where I can be a guest ;)
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slinkerleegreat podcast!This podcast has great interviews and in-depth coverage of new tools and techniques.
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